RF model loses accuracy when I remove it from Pipeline











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3
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Hoping I'm overlooking something stupid here or maybe I don't understand how this is working...



I have an nlp pipeline that does basically the following:



rf_pipeline = Pipeline([
('vect', TfidfVectorizer(tokenizer = spacy_tokenizer)),
('fit', RandomForestClassifier())
])


I run it:



clf = rf_pipeline.fit(X_train, y_train)
preds = clf.predict(X_test)


When I optimize I get accuracy in the high 90's with the following:



confusion_matrix(y_test, preds)
accuracy_score(y_test, preds)
precision_score(y_test, preds)


the TfidfVectorizer is the bottleneck in my computations, so I wanted to break out the pipeline. run the vectorizer, and then do a grid search on the classifier rather than running it on the whole pipeline. Here's how I broke it out:



# initialize
tfidf = TfidfVectorizer(tokenizer = spacy_tokenizer)
# transform and fit
vect = tfidf.fit_transform(X_train)
clf = rf_class.fit(vect, y_train)
# predict
clf.predict(tfidf.fit_transform(X_test))


When I took a look at the accuracy before I ran a full grid search it had plummeted to just over 50%. When I tried increasing the number of trees the score dropped almost 10%.



Any ideas?










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  • Could you make your example reproducible by using one of scikit-learn's included datasets? scikit-learn.org/stable/tutorial/text_analytics/…
    – hellpanderr
    Nov 11 at 11:13















up vote
3
down vote

favorite












Hoping I'm overlooking something stupid here or maybe I don't understand how this is working...



I have an nlp pipeline that does basically the following:



rf_pipeline = Pipeline([
('vect', TfidfVectorizer(tokenizer = spacy_tokenizer)),
('fit', RandomForestClassifier())
])


I run it:



clf = rf_pipeline.fit(X_train, y_train)
preds = clf.predict(X_test)


When I optimize I get accuracy in the high 90's with the following:



confusion_matrix(y_test, preds)
accuracy_score(y_test, preds)
precision_score(y_test, preds)


the TfidfVectorizer is the bottleneck in my computations, so I wanted to break out the pipeline. run the vectorizer, and then do a grid search on the classifier rather than running it on the whole pipeline. Here's how I broke it out:



# initialize
tfidf = TfidfVectorizer(tokenizer = spacy_tokenizer)
# transform and fit
vect = tfidf.fit_transform(X_train)
clf = rf_class.fit(vect, y_train)
# predict
clf.predict(tfidf.fit_transform(X_test))


When I took a look at the accuracy before I ran a full grid search it had plummeted to just over 50%. When I tried increasing the number of trees the score dropped almost 10%.



Any ideas?










share|improve this question






















  • Could you make your example reproducible by using one of scikit-learn's included datasets? scikit-learn.org/stable/tutorial/text_analytics/…
    – hellpanderr
    Nov 11 at 11:13













up vote
3
down vote

favorite









up vote
3
down vote

favorite











Hoping I'm overlooking something stupid here or maybe I don't understand how this is working...



I have an nlp pipeline that does basically the following:



rf_pipeline = Pipeline([
('vect', TfidfVectorizer(tokenizer = spacy_tokenizer)),
('fit', RandomForestClassifier())
])


I run it:



clf = rf_pipeline.fit(X_train, y_train)
preds = clf.predict(X_test)


When I optimize I get accuracy in the high 90's with the following:



confusion_matrix(y_test, preds)
accuracy_score(y_test, preds)
precision_score(y_test, preds)


the TfidfVectorizer is the bottleneck in my computations, so I wanted to break out the pipeline. run the vectorizer, and then do a grid search on the classifier rather than running it on the whole pipeline. Here's how I broke it out:



# initialize
tfidf = TfidfVectorizer(tokenizer = spacy_tokenizer)
# transform and fit
vect = tfidf.fit_transform(X_train)
clf = rf_class.fit(vect, y_train)
# predict
clf.predict(tfidf.fit_transform(X_test))


When I took a look at the accuracy before I ran a full grid search it had plummeted to just over 50%. When I tried increasing the number of trees the score dropped almost 10%.



Any ideas?










share|improve this question













Hoping I'm overlooking something stupid here or maybe I don't understand how this is working...



I have an nlp pipeline that does basically the following:



rf_pipeline = Pipeline([
('vect', TfidfVectorizer(tokenizer = spacy_tokenizer)),
('fit', RandomForestClassifier())
])


I run it:



clf = rf_pipeline.fit(X_train, y_train)
preds = clf.predict(X_test)


When I optimize I get accuracy in the high 90's with the following:



confusion_matrix(y_test, preds)
accuracy_score(y_test, preds)
precision_score(y_test, preds)


the TfidfVectorizer is the bottleneck in my computations, so I wanted to break out the pipeline. run the vectorizer, and then do a grid search on the classifier rather than running it on the whole pipeline. Here's how I broke it out:



# initialize
tfidf = TfidfVectorizer(tokenizer = spacy_tokenizer)
# transform and fit
vect = tfidf.fit_transform(X_train)
clf = rf_class.fit(vect, y_train)
# predict
clf.predict(tfidf.fit_transform(X_test))


When I took a look at the accuracy before I ran a full grid search it had plummeted to just over 50%. When I tried increasing the number of trees the score dropped almost 10%.



Any ideas?







scikit-learn nlp random-forest spacy tfidfvectorizer






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asked Nov 10 at 18:33









Oct

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  • Could you make your example reproducible by using one of scikit-learn's included datasets? scikit-learn.org/stable/tutorial/text_analytics/…
    – hellpanderr
    Nov 11 at 11:13


















  • Could you make your example reproducible by using one of scikit-learn's included datasets? scikit-learn.org/stable/tutorial/text_analytics/…
    – hellpanderr
    Nov 11 at 11:13
















Could you make your example reproducible by using one of scikit-learn's included datasets? scikit-learn.org/stable/tutorial/text_analytics/…
– hellpanderr
Nov 11 at 11:13




Could you make your example reproducible by using one of scikit-learn's included datasets? scikit-learn.org/stable/tutorial/text_analytics/…
– hellpanderr
Nov 11 at 11:13












1 Answer
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up vote
3
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For test set, you can't call fit_transform(), but just transform(), otherwise elements of a tfidf vectors has different meaning.



Try this



# predict
clf.predict(tfidf.transform(X_test))





share|improve this answer





















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    up vote
    3
    down vote













    For test set, you can't call fit_transform(), but just transform(), otherwise elements of a tfidf vectors has different meaning.



    Try this



    # predict
    clf.predict(tfidf.transform(X_test))





    share|improve this answer

























      up vote
      3
      down vote













      For test set, you can't call fit_transform(), but just transform(), otherwise elements of a tfidf vectors has different meaning.



      Try this



      # predict
      clf.predict(tfidf.transform(X_test))





      share|improve this answer























        up vote
        3
        down vote










        up vote
        3
        down vote









        For test set, you can't call fit_transform(), but just transform(), otherwise elements of a tfidf vectors has different meaning.



        Try this



        # predict
        clf.predict(tfidf.transform(X_test))





        share|improve this answer












        For test set, you can't call fit_transform(), but just transform(), otherwise elements of a tfidf vectors has different meaning.



        Try this



        # predict
        clf.predict(tfidf.transform(X_test))






        share|improve this answer












        share|improve this answer



        share|improve this answer










        answered Nov 12 at 5:04









        Tomáš Přinda

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